Thanks for the suggestions. BIOS is updated to the latest. I've already tried looking for the GEN settings in the BIOS but found nothing relevant.
By shorting, I mean this:
http://en.community.dell.com/support-forums/servers/f/956/t/19373337
No issues with the MB afterwards, except still no detection.
Will try running DDU again, and then installing the GPUs one by one via the risers.