If you still have coins in your wallet, immediately transfer them to a wallet on a computer you trust. If you ever believe that a machine you have has been compromised, don't try to fix it, just backup, wipe and re-install. Keep an image of your drive if you want to study it later to find out what happened.
In the future, if you want to keep your system safe, install questionable wallets on a virtual machine. Kubuntu and Ubuntu are free and pretty easy to install with virtualbox. Compiling a wallet is pretty easy after you have done it a few times.