Issue resolved. 

Hi, having the same issue. Put in a withdraw request early this morning, got the confirmation from BTC-E that it was done and the funds are no longer available on my account. Checked my wallet, nothing there and then checked the block chain and no transfer shown. Put in a 2nd withdraw a few hours later to a different address and with in moments it had completed.

Still waiting on the first transaction to happen, kinda new to crypto and it's got me a bit concerned.

Put in support ticket about an hour after the 2nd transaction, still no response from BTC-E support (ticket looks untouched).