I posted a reply about this in the newbies forums earlier tonight and on github as well.
Basically there are a few things happening with HFS and resource forks, spotlight indexing data, and ssd caching or having a race condition come up when putting the system to sleep or hibernate quickly and taking it out by turning it back on:
https://bitcointalk.org/index.php?topic=348426.msg3731858#msg3731858
See portion with links to HFS ssd tuning.
If you are running on a FAT partition you don't have these problems. (Can't resource fork FAT)