I have the problem with new version.
Have > 10 tokens at main acc. After updating to ver 0.9 all of them disappeared from the list.
I manually added all again but after restart they all disappear.
Look.
1. I add token GNO
https://i.gyazo.com/2a6f7d6c18f686f605a1f901f86f8074.png2. restarted Ethereum Wallet and no more token there.
Looks like They nknow about this problem. Let's wait a lot.
https://github.com/ethereum/mist/issues/2830