Jalapeno flashing with Raspberry pi jtag error message

[stridergt]

http://randomcontent.wolfnexus.net/RandomSite/reflashing-a-butterfly-labs-jalapeno-with-only-a-raspberry-pi/

I followed Red_Wolf_2's instructions and when I run jtag>detect I receive "warning: TDO seems to be stuck at 0error: not found: queue is empty"

I am connecting the pins based on the circuit board markings meaning:
 
pin 1 on jalapeno is the closest pin to the nearby edge and pin 9 is in the same 5pin row

pin 2 on the raspberry pi is the closest to the nearby edge, pin26 is in the same 13pin row

Am I doing something wrong with the cable connections, I am using old internal cd rom to sound card 3/4 pin cables
Could it be a software problem? I think my jalapeno is fairly typical with the cut heatsink and firmware 1.0.0

Thank you in advance

[stridergt]

I used noobs_v1_3_2.zip installation and chose raspbian (according to the release notes date, it is the 25-09-2013)
I used su (and even tried sudo jtag) but the same jtag>detect error message appears

[Red_Wolf_2]

I used noobs_v1_3_2.zip installation and chose raspbian (according to the release notes date, it is the 25-09-2013)
I used su (and even tried sudo jtag) but the same jtag>detect error message appears

Check what programs you have running in the background, also what modules are loaded at the time too...
Use ps wax to list active processes
Use lsmod to list loaded modules
Kill any unnecessary processes and use rmmod to disable any modules that are obviously unnecessary or which might be interfering with the GPIO pins.