This essentially means that any old unencrypted backups of the wallet.dat file are useless.
No, your understanding is wrong. The Encrypt wallet isn't a function of the blockchain, it's a function of the local wallet.
The encrypted wallet just lets you use your live wallet a bit more securely. If you still have an unencrypted backup of that wallet around, it's still as vulnerable as it ever has been.
Similarly, if you lose a USB stick containing an unencrypted wallet, you cannot suddenly mitigate the damage by taking a backup file and encrypting that.