I can see US citizens are scared of their IRS but this is getting a little crazy if you are scared of what the IRS may think of you if you mix. If you're under a jurisdiction that is chaotic and unpredictable to the point of giving you bad dreams and making you question your every move, you should change the jurisdiction. You're a free grownup, don't live like a slave.
I don't care about the IRS, never had anything to do with them and I have no plans to change it.
You also shouldn't worry about exchanges. Worst case scenario one country like the US will make their registered exchanges send back all funds that were previously mixed which will be such a hassle for the exchanges that many will just leave the country or go bankrupt. If they ban it there will always be someone to accept it because free market and stuff.
Better safe than sorry is a fine philosophy. Most people don't want to emigrate to spend a bit of money.
I agree that rejecting mixed coins will become nightmarish but the people who demand these rules are too.
Since OP's money is legit and there may be other options, or the option of staying put, then marking them for future ball ache doesn't seem like a good move even if it's an outlandish possibility.
Like I said I'd happily mix coins for spending. I wouldn't do it with a main stash.