I don't use GUIMiner anymore. I switched from GUIMiner to Phoenix 2 when it got updated to version 2 (guiminer doesnt support phoenix 2 because it uses a cfg file instead of command-line arguments), then I later switched to bfgminer (a fork of cgminer) because I needed better pool connection behavior. The hashrates between bfgminer and phoenix 2 should be identical given that I'm using the same kernels and kernel arguments.
what is the intensity you are using??