SOLVED
And the solution was really simple after all.
Here is a description of what I did to get it to work. Sorry if it is a bit haphazard. Most of these steps are copy and paste
from other people who have had similar problems.
I first removed the current driver (sudo apt-get purge "fglrx.*" <- this was installed via the Settings - Additional Drivers)
I then dowloaded the latest driver for Ubuntu 14.04 from the AMD website,
This is a zip file. Mine was radeon-crimson-15.12-15.302-151217a-297685e.zip
I unzipped and ran the installer script (sudo ./amd-driver-installer-15.302-x86.x86_64.run)
and made it make packages for Ubuntu/Trusty.
After the driver was installed I ran the initialization command.
sudo aticonfig --lsa
sudo aticonfig --adapter=all --initial -f
The gpu-manager was destroying my /etc/X11/xorg.conf file.
so I edited this file:
/etc/init/gpu-manager.conf
by commenting out the first lines:
#start on (starting lightdm
# or starting kdm
# or starting xdm
# or starting lxdm)
task
exec gpu-manager --log /var/log/gpu-manager.log
Then I rebooted.
Then:
sudo aticonfig --adapter=all --odgt
And I was able to see the temp on all cards:
Adapter 0 - AMD Radeon R9 200 Series
Sensor 0: Temperature - 29.00 C
Adapter 1 - AMD Radeon R9 200 Series
Sensor 0: Temperature - 30.00 C
Adapter 2 - AMD Radeon R9 200 Series
Sensor 0: Temperature - 24.00 C
So now I am able to mine and monitor the temps of my GPUs.
I hope that this could help somebody else having similar problem.