If all miners agree that segwit should be deployed,
Code is law (this sentence is hard to understand but will rule the world): 95% of the new blocks must be mined with the new version of the software during 2 weeks
So to my opinion such an agreement can't happen.
they can configure their software to ignore blocks being produced by the malicious entity
If this malicious entity produce blocks which match with the mathematical rules. They will be accepted ?
To refuse these blocks of the "malicious entity", it would require a new BIP (protocol innovation). I don't think it's just a "matter of configuration"
Further in your post, i understand that you are imagining that this malicous entity would be isolated in the blockchain and an hard fork would happen.
To my opinion SEGWIT will not be accepted... And only a crypto currency as close as possible to the philosophy "1 computer = 1 vote" will be able in the future to carry such an evolution at such a stage of development.
It's hard to write it that but i can't think that 95% of the miners will let bitcoin reach the final stage of its development.
Any counter argument is welcome
Excuse my english