i'm not an expert, but when the nodes are updating they cant confirm transactions, can they?
A node can update its client in couple of minutes, they can use their existing blockchain and update the client so it shouldn't affect confirmation times..... Also all ~5500 nodes will not choose to update at the exact same time
While we are on the subject more new people should run a full node to help strengthen the network, just open port 8333 on the router and you will be doing your bit to help btc stay secure and fast, if anyone needs help just mention it here, I or someone else will be happy to help