After stripping my Jalapeno for cooler running, firstly removing the case and flipping the fan over so the air is now pushed down over the heatsink, I took a laser thermometer to all the chips on the board, and the hottest chips on the board were the MOSFETS (currently without heatsinks in my picture the two groups of 6 chips) as I am still crafting these to fit, however I have cooled the ADP1850 and surrounding chips, these were all pushing over 50 degrees C, they now run much cooler. Currently the MOSFETS are 65+ degrees C, so these will be next for some heatsinking.
From my initial observations my hashing seems solid around 5.6Gh/s before cooling hashing jumped around from 5.00Gh/s to 5.8Gh/s frequently, it now appears to have found it's own sweet spot. It is too early to see if the cooling is the key factor in this increased stability, however I am confident the lower temps are helping prolong the life of the hardware.