I've had similar issues. I run my miners remotely. However, if I have to restart it, I will need to turn on the monitor or else the card connected to the monitor will hash at 1/2 the speed it's capable of. The reason for this? No clue.. but turning it on and then running w/e miner software will remedy this. After that, I can turn the monitor off and start hashing away as normal. I don't know if this might fix your issue but I'd thought it's still worth 0.000001BTC to someone else of similar issues.
That's really wierd. I will have to check that out. I run mine remotely too.
How do you adjust clock speed etc..remotely? Afterburner doesn't show up right. Can't adjust remotely