Long term, I would say that power supply is not going to cut it. 3 x 6950s draw 600w on the 12V rail at stock. Short term, it should probably at least boot.
However, it probably is related to the board deactivating one of the PCI-E ports. You can pinmod it using this method:
http://forum.bitcoin.org/index.php?topic=30831.msg387449#msg387449Keep in mind, there is a reason the manufacturer disabled that port, because it may have insufficient traces to support the power from 3 ports at once.