I originally powered all the risers with the same PSU connected to the motherboard on my triple and dual PSU rigs. After a recent discussion and reading a Biostar 12 GPU dual PSU mining setup guide, I found it's better to power the GPU power and riser with the same PSU.
http://www.biostar.com.tw/app/kr/event/crypto_mining/page4_2.htm**The power cable for riser card and power cable for graphics card must come from same power supply uint.
*Each power cable from power supply is limited to be connected to 2 graphics cards or 2 PCI-Ex16 riser cards.
On a side note, I ran my dual and triple PSU rigs with all the risers connected to PSU that powers the motherboard and the secondary PSU's only powering the VGA 6/8 pin power under a heavy dual mining load 24/7 for almost a year and nothing bad came from it and my rigs are very stable.
https://bitcointalk.org/index.php?topic=3132140.msg32484281#msg32484281