Windows?
Make a batch file and define each separate type "group."
For instance, if I had USB Block Erupters and Bitmain AntMiner U1's, I'd do the following:
bfgminer.exe -S erupter:all --icarus-options 115200:1:1 --icarus-timing 3.0=100 -S antminer:\\.\COM69 --set-device antminer:clock=x0981 -o pool.whereiminemycoins.net:1234 -u myworkeraccount -p myworkeraccountpassword
Ok, so in the above command we can see that "-S erupter:all --icarus-options 115200:1:1 --icarus-timing 3.0=100" is defining our USB Block Erupters and instructing bfgminer to look at every com port.
The entry "-S antminer:\\.\COM69 --set-device antminer:clock=x0981" is defining our Bitmain AntMiner U1's to a specific com port and overclocking it to 2GH/s.
I apologize that I don't know of the YellowJackets, but it's sure to be the same--check out the readme in the files that accompany the bfgminer download (there are several readme's!).
Make sure you have the cp210x drivers installed (don't use zadig if you want to use bfgminer!).
Hope this helps!