We made a change to more properly handle the malleable transactions, which required a new normalized index. Our servers are re-indexing transactions from the most recent to oldest. Some older hashes (if the transaction as altered) will not show up until they are indexed. Give it some time, and you should be able to search for the transaction again.
Hope this helps.
This is still an issue. The tx_hash values being returned from the /payment wallet endpoint are not in the Blockchain and are different from the tx_hash values in the Blockchain.info Wallet web interface.
Is there a fix incoming or has someone found a workaround?