So I thought I was being clever by finding a couple of good deals on Gigabyte boards with five slots total, as they were half the price of the BTC specific boards (I wasn't going to install more than 5 cards anyways).
The model numbers are
http://www.gigabyte.com/products/product-page.aspx?pid=3483#ov and GA-Z68AP-D3
http://www.gigabyte.com/products/product-page.aspx?pid=3483#ovOn both boards I tried all combination of cards, and risers (all powered USB risers).
On both boards one card would always not install. This would randomly seem to vary by slot and by card, almost with each reboot. Strange thing is this happened on both machines.
I used neosmart's tool to disable driver signature verification, but that didn't help. This seemed to be a different issue as on both boards, four cards were no issue (all slots work, just not all five) but the fifth one always faltered. I thought since I was using powered risers this would not be an issue.
Perhaps there was an IRQ issue or something similar, so I disabled every extra peripheral in BIOS (audio, extra SATA ports, USB, etc).
I am using a 1200W PSU in one rig (powering a 7970 and three 7850s) and a 1600W PSU powering the other (4 7950s).
Any ideas? Thanks in advance!