The idea behind encrypted qr codes is to remove that risk of anyone can scan it and access the info.
But again, a QR is just a representation of data.
You don't "encrypt a QR code". You encrypt information and then represent it as a QR code.
That's the same as encrypting a number and representing it in hex or binary or as characters. There is no difference. In the end, each data is binary.
If you encrypt the information, it is encrypted. Afterwards it doesn't matter whether you represent it as a hex string or as a QR code.
I don't know what exactly you want to accomplish, but the general flow would be:
- Encrypt your information (e.g. private key, mnemonic code, ...)
- Save the QR code