Plus, using extended bip39 passphrase can add another layer of security and make the resulting wallet much harder to attack through seed generation weaknesses.
This doesn't really matter if you are using seed phrase generated with weak entropy.
One developer proved this with example of recent c0oldcard crap addresses, he added multiple passphrases with different complexities, and all addresses got emptied withing minutes.
You can't depend on strongest passphrase when weak base will crumble everything.
Can you link to the source for this?
I searched for information regarding weak entropy generation combined with a strong bip39 passphrase, and from what i can find, a sufficiently strong and independently generated passphrase should make the resulting wallet significantly harder to compromise, since the attacker would need to recover both the weakly generated seed and the passphrase.
That said, if the experiment/research demonstrates that the passphrase does not provide the expected protection in this particular scenario, that's obviously concerning.