I figured out what happened in the end. When I generated last batch od deposit addresses I accidently replaced one word with another word of similar meaning. For some reason Electrum still generated wallet (don't have any idea how it passed checksum check?). That way I had two wallets.
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And it's rare to accidentally replace one word since we usually copy and paste the phrase or manually type it from the backup paper. So I'm wondering maybe you keep it in your mind that you replaced one word with another.
I tried to remember the seed phrase, as it was complicated for me to get memory stick every time when I wanted to generate new batch of receiving addresses. The memory stick with seed phrase is on remote location, so I have to go there, get the memory stick write seed on paper, go home to run it on Tails, generate receiving addresses, and finally destroy the paper with seed.
I have repeated this proccess two times and didn't want to do it third time as I didn't want to go to remote location again, so I just remembered seed phrase. The problem was that I accidently remembered one word wrong and switched to word with similar meaning (I subsequently checked and this word is not on BIP 39 list but when I typed automatically I didn't gave attention to that). I was 100% sure that I remembered everything right.
That night I was in panic mode as I couldn't recreate right wallet and I didn't have access to memory stick as it was late night.
The next day I decided to double check every step, and when I got memory stick I immediately realised my mistake and noticed that I swapped one word.
Why don't you tell us what word it is exactly? Because I am wondering how it is possible to accidentally replace one word unless you keep one of those words with a similar meaning in your mind.
Sorry but I'm not really comfortable sharing such information about my cold wallet but as I said I switched word with another thst is not on BIP 39 list. Electrum automatically highlights word if it is BIP 39 but I was frustrated just watched the keyboard when I typed the words. I realised that switched word is not BIP 39 next day when I cooled down a bit.