I read that the GA-990FXA-UD5 need some wiring added to some PCI-E slop to fix theses issue, maybe it's the same for the UD3 (I have personally ordered the same board than you with 6 7970... should get it in two day..
There is the link about the mod :
https://bitcointalk.org/index.php?topic=36061.0From what I read, you need this mod for each 16X card plugged on a 16X slot with a 1X riser but it might be different.