After looking at this closer, I am convinced this is a USB bandwidth issue. I believe the long blink is actually idle time. I can't even copy files from a USB drive when they are running.
from my experience that is due to power issues. remove a stick or 2 and see if the problem continues. Also power issues create a ton hardware errors, well over the 1% expected rate. ow many amps is your transformer supplying for how many sticks?