I know but the text from a .conf file looks a lot different than a .bat file, is there any way to convert one without having to edit the text manually?
try it another way
create bat file (in folder with cgminer.exe) and put in: cgminer -c path_to_conf_file
e.g.
cgminer -c c:\cgminer-3.7.2-windows\MyCongf.conf