If Muslim wanted to kill Jews they would have done so centuries before when they were the strongest, but in fact they did the opposite, Jews were well threated in Muslim countries, heck when Islam was tossed out of what's we know now as Spain, Jews followed muslims to north African countries because they feared for them selfs.
Muslims started to hate the Jews only after the creation of Israel. Before that, the Jews were among the privileged citizens in the Islamic nations. For example, in Turkey the Jews enjoyed almost all the privileges which were granted to the Muslims, while the Christians (mostly Assyrians, Greeks and Armenians) were treated with extreme brutality.
Even Christians were well treated in general, but in conflict area there were of course problems, wars never ceased in the Spain-Morocco area on the west and on the east it was mainly in the frontier of Turkey especially during the Ottoman empire , but Christians were fine in middle east countries such Iraq (hence there are Christian population there right now, Syria, Lebanon, Palestine...ect