After reading about CLTV (a fairly simple explanation of it can be found here:
https://bitcoinmagazine.com/articles/checklocktimeverify-or-how-a-time-lock-patch-will-boost-bitcoin-s-potential-1446658530) I have worked out how to tie it to the ACCT AT implementation and the workflow is as follows (assuming that Alice and Bob have decided that they are wanting to exchange 100 ATC for 0.001 BTC respectively and assuming fees have been added as appropriate for each blockchain):
Alice creates an ACCT AT to transfer 100 ATC to Bob (locked by a "secret" and with an automatic refund after 24 hours).
Alice gives Bob a BTC public key and then Bob then creates a Bitcoin 2 of 2 multi-sig address and sends 0.001 BTC to it with a special P2SH script.
The first part of this script requires Alice's signature plus a secret and the second part only requires Bob's signature but is CLTV locked for 12 hours.
Assuming both parties are happy (say after 6 confirmations) then Alice will send a tx that contains the secret in order to move the BTC to another address she owns and Bob will send that secret to the ACCT AT to transfer the ATC to his account on the AT supporting blockchain.
If Alice never sends the tx then after 12 hours Bob can simply create a new tx to refund his BTC to another address and of course if Bob never creates the correct Bitcoin tx then Alice will automatically have her ATC refunded after 24 hours (of course 12 and 24 hours could be made smaller if desired).
Although it is a little more tricky on the BTC side, assuming that some software is written to take care of the script and multi-sig address, then it will be entirely possible to exchange BTC for any ATC (such as BURST or QORA) without the need of any 3rd party (although you'd still need to find somewhere to match an order).