the commands should still be there.. are you sure using the correct version?
I think so. This is staying there.
Namecoin version 0.3.62
Copyright © 2009-2013 The Bitcoin and Namecoin developers
help
backupwallet <destination>
buildmerkletree <obj>...
createrawtransaction [{"txid":txid,"vout":n},...] {address:amount,...}
decoderawtransaction <hex string>
deletetransaction <txid>
dumpprivkey <namecoinaddress>
encryptwallet <passphrase>
getaccount <namecoinaddress>
getaccountaddress <account>
getaddressesbyaccount <account>
getauxblock [<hash> <auxpow>]
getbalance [account] [minconf=1]
getblockbycount height
getblockbyhash hash
getblockcount
getblocknumber
getconnectioncount
getdifficulty
getgenerate
gethashespersec
getinfo
getmemorypool [data]
getnewaddress [account]
getrawtransaction <txid> [verbose=0]
getreceivedbyaccount <account> [minconf=1]
getreceivedbyaddress <namecoinaddress> [minconf=1]
gettransaction <txid>
getwork [data]
getworkaux <aux>
help [command]
importaddress <namecoinaddress> [label] [rescan=true]
importprivkey <namecoinprivkey> [label] [rescan=true]
listaccounts [minconf=1]
listaddressgroupings
listreceivedbyaccount [minconf=1] [includeempty=false]
listreceivedbyaddress [minconf=1] [includeempty=false]
listtransactions [account] [count=10] [from=0]
listunspent [minconf=1] [maxconf=9999999] ["address",...]
move <fromaccount> <toaccount> <amount> [minconf=1] [comment]
name_clean
name_debug
name_debug1 <name>
name_filter [regexp] [maxage=36000] [from=0] [nb=0] [stat]
name_firstupdate <name> <rand> [<tx>] <value>
name_history <name>
name_list [<name>]
name_new <name>
name_scan [<start-name>] [<max-returned>]
name_show <name>
name_update <name> <value> [<toaddress>]
sendfrom <fromaccount> <tonamecoinaddress> <amount> [minconf=1] [comment] [comment-to]
sendmany <fromaccount> {address:amount,...} [minconf=1] [comment]
sendrawtransaction <hex string>
sendtoaddress <namecoinaddress> <amount> [comment] [comment-to]
sendtoname <namecoinname> <amount> [comment] [comment-to]
setaccount <namecoinaddress> <account>
setgenerate <generate> [genproclimit]
setmininput <amount>
settxfee <amount>
signmessage <namecoinaddress> <message>
signrawtransaction <hex string> [{"txid":txid,"vout":n,"scriptPubKey":hex},...] [<privatekey1>,...] [sighashtype="ALL"]
stop
validateaddress <namecoinaddress>
verifymessage <namecoinaddress> <signature> <message>
that's all
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walletpassphrase
Error: running with an unencrypted wallet, but walletpassphrase was called. (code -15)
It seems that the command is there only help is not listing it.